- readManifest(File) - Static method in class edu.claflin.finder.io.ManifestParser
-
Reads the manifest file.
- removeBoolean(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle
-
Removes a boolean from the booleanList.
- removeCondition(Condition) - Method in class edu.claflin.finder.algo.ArgumentsBundle
-
Removes a Condition from the conditionsList.
- removeCondition(Condition) - Method in class edu.claflin.finder.logic.ConditionedGraph
-
Removes a condition from the graph.
- removeDouble(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle
-
Removes a double from the doubleList.
- removeEdgesBetweenAllNodesInList(ArrayList<Node>) - Method in class edu.claflin.finder.logic.Graph
-
Removes edges in between all possible pair combinations of nodes in a list
if both nodes involved are present in the graph.
- removeEnum(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle
-
Removes an enum from the enumList.
- removeInteger(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle
-
Removes an integer from the integerList.
- removeNode(Node) - Method in class edu.claflin.finder.logic.Graph
-
Removes a node from the set.
- removeObject(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle
-
Removes an object from the enumList.
- removePropertyChangeListener(PropertyChangeListener) - Method in class edu.claflin.finder.algo.Algorithm
-
Removes a PropertyChangeListener.
- reorder(Graph, Graph) - Method in class edu.claflin.finder.algo.Algorithm
-
- reportProblem(String, String) - Method in class edu.claflin.finder.log.LogUtil
-
Used to report problems with the logging engine to the terminal.
- results - Variable in class edu.claflin.finder.logic.cygrouper.CytogrouperMain
-